agatha.construct.document_parsers.parse_pubmed_xml module¶
-
agatha.construct.document_parsers.parse_pubmed_xml.
parse_zipped_pubmed_xml
(xml_path)¶ Copies the given xml file to local scratch, and then gets the set of articles, represented by a list of dicts.
- Return type
List
[Dict
[str
,Any
]]
-
agatha.construct.document_parsers.parse_pubmed_xml.
pubmed_xml_to_record
(pubmed_elem)¶ Given a PubmedArticle element, parse out all the fields we care about. Fields are represented as a dictionary.
- Return type
Dict
[str
,Any
]
-
agatha.construct.document_parsers.parse_pubmed_xml.
xml_obj_to_date
(elem)¶ - Return type
str