agatha.construct.document_parsers.parse_pubmed_xml module¶
-
agatha.construct.document_parsers.parse_pubmed_xml.parse_zipped_pubmed_xml(xml_path)¶ Copies the given xml file to local scratch, and then gets the set of articles, represented by a list of dicts.
- Return type
List[Dict[str,Any]]
-
agatha.construct.document_parsers.parse_pubmed_xml.pubmed_xml_to_record(pubmed_elem)¶ Given a PubmedArticle element, parse out all the fields we care about. Fields are represented as a dictionary.
- Return type
Dict[str,Any]
-
agatha.construct.document_parsers.parse_pubmed_xml.xml_obj_to_date(elem)¶ - Return type
str