agatha.util.entity_types module

agatha.util.entity_types.is_data_bank_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_entity_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_gene_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_graph_key(name)
Return type

bool

agatha.util.entity_types.is_lemma_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_mesh_term_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_ngram_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_predicate_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_sentence_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.is_type(type_key, name)

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name (str) – Unsure name we’re querying

  • type_key (str) – Single character type, such as one of the strings in this module.

Return type

bool

agatha.util.entity_types.is_umls_term_type(name: str) → bool

True if name is an appropriately formatted key of the specified type.

Names should be in the form “{type_key}:{name}”

Parameters

  • name – Unsure name we’re querying

  • type_key – Single character type, such as one of the strings in this module.

agatha.util.entity_types.to_graph_key(name, key)
Return type

str