agatha.util.test_umls_util module¶

agatha.util.test_umls_util.TEST_MRCONSO_PATH = PosixPath('test_data/tiny_MRCONSO.RRF')¶

tiny_MRCONSO

Only contains the top-1000 lines from 2020AA Only contains the following UMLS terms:

agatha.util.test_umls_util.test_codes_with_minimum_edit_distance()¶

agatha.util.test_umls_util.test_create_umls_index()¶

agatha.util.test_umls_util.test_create_umls_index_filter()¶

agatha.util.test_umls_util.test_filter_atoms_code_subset()¶

agatha.util.test_umls_util.test_filter_atoms_language_eng()¶

agatha.util.test_umls_util.test_filter_atoms_suppress_content()¶

agatha.util.test_umls_util.test_find_codes()¶

agatha.util.test_umls_util.test_has_code()¶

agatha.util.test_umls_util.test_has_pref_text()¶

agatha.util.test_umls_util.test_parse_first_line()¶

agatha.util.test_umls_util.test_parse_mrconso()¶: Need to parse all 1000 lines of TEST_MRCONSO_PATH